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Issues (1–25 of 68)

Title T P Status Votes Assignee Milestone Created Updated Actions
#196: Can my IGH seq data be analyzed by this pipeline?
proposal minor closed
#186: MakeDb.py igblast fails with KeyError: '# Query:'
bug minor resolved
#192: createGermlines.py error
bug minor resolved
#181: Update CreateGermlines to be consistent with clean_imgtdb.py and use the first allele
bug minor resolved
#184: Add merge command to IMGT parsings docs
enhancement minor resolved
#183: DefineClones.py generates non determistic clone_id with nproc > 1
enhancement minor wontfix
#182: Error with MakeDb.py imgt
task minor resolved
#180: Have AssignGenes pass igblast warnings to the user somehow
enhancement minor new
#131: IMGT seqence/germline build in ConvertDb doesn't seem right
bug minor new 1
#168: ParseDb-select gives obtuse error for missing fields
enhancement minor resolved
#170: AlignRecords doesn't handle missing data
bug minor resolved
#167: Add sample annotation argument to ParseDb-merge
enhancement minor new
#164: A validator for submissions to Genbank
proposal minor new
#151: BuildTrees prints record count after minseq filtering
bug minor resolved
#155: Germline doesn't build for amino acid sequences in MakeDb-igblast-aa
enhancement minor resolved
#137: tbl2asn wrapper fails in some environments
bug minor closed
#36: Extension of distance matrix doesn't properly account for ambiguous characters
enhancement minor resolved
#148: Maybe merge extended field arguments in MakeDb
enhancement minor resolved
#140: MakeDb assigning failed germlines to None
bug minor resolved
#135: Use yaml via -y to support additional Biosample attributes
enhancement minor resolved
#127: Add IMGT-gapping to AIRR conversion
enhancement minor resolved
#128: Add germline construction to MakeDb
enhancement minor resolved
#107: Verify V_SEQ_LENGTH is correct when indels are present
bug minor resolved
#116: Added support to MakeDb-igblast for non-standard gene names
enhancement minor resolved
#94: Add gene column arguments to DefineClones
enhancement minor resolved
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