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Issues (26–50 of 99)

Title T P Status Votes Assignee Milestone Created Updated Actions
#157: Review NEWS
task major resolved
#152: Allow custom junction boundary definitions in MakeDb
enhancement major resolved
#150: Potential issue in MakeDB.py: Junction region not accurate for IgL in rheus macaques
bug major resolved
#125: Check performance of DefineClones with `--act set` in current version
enhancement major on hold
#141: Trouble installing IgPhyML
bug major resolved
#87: MakeDb does not support multiple D segment junctions
enhancement major new
#154: --md option for BuildTrees.py cannot accept more than one field
bug major resolved
#153: BuildTrees error handling if SEQUENCE_ID contains commas or parentheses
bug major resolved
#149: All `GERMLINE_IMGT` appear to be `NA` from `MakeDb.py imgt` v0.4.5
bug major resolved
#145: Support for 10X VDJ
enhancement major resolved
#146: CreateGermlines --cloned: select one D using majority rule
proposal major new
#144: pRESTO style annotations and IgBlast AIRR output
proposal major new
#143: DefineClones doesn't work when db was created with MakeDb igblast --asis-calls
proposal major new
#139: DefineClones will group all sequences together if the junction column is missing
bug major resolved
#142: BuildTrees.py - output not usable by IgPhyML when --outname begins with a number
bug major resolved
#138: CreateGermlines gives warning about IMGT-numbering spacers
bug major resolved
#136: DefineClones fails with "error in sibling process"
bug major resolved
#134: Improve error reporting
enhancement major resolved
#63: Simple IgBLAST wrapper
enhancement major resolved
#129: bug in the example of: "Determining a clustering threshold"
bug major resolved
#130: Installation issue with pip v10
bug major resolved
#126: Add validation test for SEQUENCE_IMGT to MakeDb
bug major resolved
#124: setup.py not compatible with pip 10
bug major resolved
#123: MakeDb.py, KeyError: 'subject seq'
bug major resolved
#114: Additional features to add to ConvertDb-genbank
enhancement major resolved
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