1. kleinstein-lab Avatar kleinstein-lab
  2. B Cell Repertoires
  3. changeo

Issues

Filter by:

Advanced search

Issues (1–25 of 99)

Title T P Status Votes Assignee Milestone Created Updated Actions
#84: Flesh out MakeDb unit tests
enhancement major new 2
#165: IgBlast incorrect output for Light Chain
bug major resolved 1
#197: Update IgBLAST example to include c_call
task major new
#188: C region in the igblast output breaks MakeDb.py
bug major resolved
#191: # Failure download reference databases and setup IGDATA directory
bug major closed
#185: MakeDb all TRA goes to fail file
bug major resolved
#193: CreateGermlines.py fails with error 'Germline sequence differs in length from input sequence by X characters.'
bug major resolved
#195: ValueError: Missing one or more columns in heavy chain file: clone_id
bug major resolved
#190: CreateGermlines.py does not generate full germline upon -g full option
bug major new
#189: Error in conda version of changeo
bug major resolved
#187: CreateGermlines.py fails
bug major resolved
#179: Assign Genes skips several rows of sequences
bug major resolved
#178: When no junction found, MakeDb imgt doesn't report j_germ_start correctly
bug major new
#176: Consider adding .py to usage in command line documentation
proposal major resolved
#177: fetch_imgtdb.sh empty V files
bug major closed
#174: MakeDb.py igblast arguments --regions and --scores produces errors
bug major resolved
#147: Change-O modifications to support 10X data
enhancement major resolved
#172: fetch_igblastdb.sh seems to be broken
bug major closed
#171: KeyError: 'V Frame shift'
bug major resolved
#169: Error in MakeDb.py
bug major resolved
#163: Test ConvertGDb genbank in Windows
bug major resolved
#162: ConvertDb genbank should test the number of sequences in input and output match
enhancement major new
#160: Verify all argument defaults are now AIRR column names
task major resolved
#161: Verify all docs now use AIRR example files
task major resolved
#159: CDS missing from ConvertDb-genbank output
bug major resolved
  2. 1
  3. 2
  4. 3
  5. 4