kleinstein / shazam / issues

Title	T	P	Status	Assignee	Created	Updated
#82: dply 0.6.0 incompatibility	bug	minor	resolved	Jason Vander Heiden	2017-04-25	2017-05-05
#69: findthreshold()	enhancement	major	resolved	sivagnon@gmail.com	2016-10-31	2017-03-23
#75: findThreshold is slow	enhancement	major	resolved	nima nouri	2016-11-25	2017-03-23
#80: non-NA sigma mean returned by BASELINe local test for codons with no sequence data during codon-by-codon analysis	bug	major	resolved	Julian Zhou	2017-03-08	2017-03-08
#79: In collapseClones and DistToNearest foreach implementation is suppressing errors	bug	minor	resolved	ssnn	2017-01-25	2017-02-27
#78: Non-existent regionDefinition fails to produce sensible error	bug	minor	resolved		2017-01-24	2017-01-25
#72: R CMD check issues	bug	trivial	resolved	Julian Zhou	2016-11-18	2016-12-21
#77: Update calcTargetingDistance	task	minor	resolved	Julian Zhou	2016-12-20	2016-12-20
#71: website change for HKL_S5F	enhancement	minor	resolved		2016-11-17	2016-12-20
#76: add baseline correction to reference on readthedocs	enhancement	minor	resolved	Julian Zhou	2016-12-14	2016-12-20
#73: inconsistency in 1-mer substitution matrices	task	minor	resolved		2016-11-18	2016-12-20
#74: Make a function to make degenerate 5-mer model	enhancement	minor	resolved	Julian Zhou	2016-11-18	2016-11-28
#70: Add human and mouse light chain models	enhancement	minor	resolved	Julian Zhou	2016-11-07	2016-11-17
#67: calcBaseline, error when no clones to collapse	bug	major	resolved	Jason Vander Heiden	2016-08-01	2016-08-01
#61: distToNearest vignette. Add cross-sample example	task	trivial	resolved	ssnn	2016-07-11	2016-07-27
#62: groupColors argument to plotBaselineSummary doesn't order values	bug	trivial	resolved		2016-07-11	2016-07-26
#18: distToNearest needs better error checking	enhancement	minor	resolved	Namita Gupta	2015-06-02	2016-07-25
#65: Use alakazam dependency version to build from the repo or from CRAN	task	minor	resolved	ssnn	2016-07-22	2016-07-22
#60: Allow lowercase input	bug	minor	resolved		2016-07-05	2016-07-20
#59: Clarify selection PDF convolution requirement in docs	enhancement	trivial	resolved		2016-06-30	2016-07-19
#63: Replace InfluenzaDb with ExampleDb from alakazam	enhancement	minor	resolved		2016-07-13	2016-07-15
#54: Running groupBaseline twice results in incorrect summary stats	bug	major	resolved	Jason Vander Heiden	2016-03-29	2016-07-14
#1: Add cross-sample distToNearest mode	enhancement	major	resolved	ssnn	2015-03-05	2016-07-11
#57: getClosestBy1Mer is broken when model=aa	bug	critical	resolved		2016-06-10	2016-06-13
#58: dist1Mers is no longer used	task	trivial	resolved	Namita Gupta	2016-06-12	2016-06-13

#82: dply 0.6.0 incompatibility

bug

minor

resolved

Jason Vander Heiden

2017-04-25

2017-05-05

#69: findthreshold()

enhancement

major

resolved

sivagnon@gmail.com

2016-10-31

2017-03-23

#75: findThreshold is slow

enhancement

major

resolved

nima nouri

2016-11-25

2017-03-23

#80: non-NA sigma mean returned by BASELINe local test for codons with no sequence data during codon-by-codon analysis

bug

major

resolved

Julian Zhou

2017-03-08

#79: In collapseClones and DistToNearest foreach implementation is suppressing errors

bug

minor

resolved

ssnn

2017-01-25

2017-02-27

#78: Non-existent regionDefinition fails to produce sensible error

bug

minor

resolved

2017-01-24

2017-01-25

#72: R CMD check issues

bug

trivial

resolved

Julian Zhou

2016-11-18

2016-12-21

#77: Update calcTargetingDistance

task

minor

resolved

Julian Zhou

2016-12-20

#71: website change for HKL_S5F

enhancement

minor

resolved

2016-11-17

2016-12-20

#76: add baseline correction to reference on readthedocs

enhancement

minor

resolved

Julian Zhou

2016-12-14

2016-12-20

#73: inconsistency in 1-mer substitution matrices

task

minor

resolved

2016-11-18

2016-12-20

#74: Make a function to make degenerate 5-mer model

enhancement

minor

resolved

Julian Zhou

2016-11-18

2016-11-28

#70: Add human and mouse light chain models

enhancement

minor

resolved

Julian Zhou

2016-11-07

2016-11-17

#67: calcBaseline, error when no clones to collapse

bug

major

resolved

Jason Vander Heiden

2016-08-01

#61: distToNearest vignette. Add cross-sample example

task

trivial

resolved

ssnn

2016-07-11

2016-07-27

#62: groupColors argument to plotBaselineSummary doesn't order values

bug

trivial

resolved

2016-07-11

2016-07-26

#18: distToNearest needs better error checking

enhancement

minor

resolved

Namita Gupta

2015-06-02

2016-07-25

#65: Use alakazam dependency version to build from the repo or from CRAN

task

minor

resolved

ssnn

2016-07-22

#60: Allow lowercase input

bug

minor

resolved

2016-07-05

2016-07-20

#59: Clarify selection PDF convolution requirement in docs

enhancement

trivial

resolved

2016-06-30

2016-07-19

#63: Replace InfluenzaDb with ExampleDb from alakazam

enhancement

minor

resolved

2016-07-13

2016-07-15

#54: Running groupBaseline twice results in incorrect summary stats

bug

major

resolved

Jason Vander Heiden

2016-03-29

2016-07-14

#1: Add cross-sample distToNearest mode

enhancement

major

resolved

ssnn

2015-03-05

2016-07-11

#57: getClosestBy1Mer is broken when model=aa

bug

critical

resolved

2016-06-10

2016-06-13

#58: dist1Mers is no longer used

task

trivial

resolved

Namita Gupta

2016-06-12

2016-06-13

Issues

Issues (76–100 of 143)