Welcome to the ACID Wiki!

This Wiki collects practical information and tips helping you to optimally use ACID in your research. Being a Wiki it is collaborative in nature, so feel free to edit and improve it's content!

Overview

The ACID toolbox has been developed for brain and spinal cord DTI data (see ISMRM-2022 Abstract).

Below, we provide a description of each module of the ACID toolbox.

Getting started

Learn more about how to download and install ACID.

Tutorials

Latest tutorial at the SPM-Course in Hamburg 2019 is available here.

Example batches

Two example batches are stored in the Example_Batches folder in the ACID main folder. They include ECMOCO, POAS, HySCO and DKI. One of them performs in addition the biophysical parameter estimation.

BIDS

Modules

• Configure toolbox

• Pre-processing

  • Eddy Current and Motion Correction (ECMOCO)
  • Hyperelastic Susceptibility Artefact Correction (HySCO)
  • Multi-shell Position-Orientation Adaptive Smoothing (msPOAS)

• Diffusion signal fitting models (DTI/DKI)

• [Biophysical models] ISMRM-2022 Abstract , Paper

• ACID-Utilities

  • DWI series browser
  • Image cropping
  • DWI series movie
  • ROI analysis
  • Slice-wise realignment
  • Reliability masking