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Issues (1–25 of 197)

Title T P Status Votes Assignee Milestone Created Updated Actions
#197: Update IgBLAST example to include c_call
task major new
#182: Error with MakeDb.py imgt
task minor resolved
#160: Verify all argument defaults are now AIRR column names
task major resolved
#161: Verify all docs now use AIRR example files
task major resolved
#157: Review NEWS
task major resolved
#117: Verify indexing for functions
task critical resolved
#120: Check all field arguments for case sensitivity
task trivial resolved
#101: Remove repo_dict tuple keys after merge default
task minor resolved
#38: How should X be scored in DefineClones?
task minor resolved
#69: Update required fields in CreateGermlines
task minor resolved
#196: Can my IGH seq data be analyzed by this pipeline?
proposal minor closed
#176: Consider adding .py to usage in command line documentation
proposal major resolved
#164: A validator for submissions to Genbank
proposal minor new
#146: CreateGermlines --cloned: select one D using majority rule
proposal major new
#144: pRESTO style annotations and IgBlast AIRR output
proposal major new
#143: DefineClones doesn't work when db was created with MakeDb igblast --asis-calls
proposal major new
#91: Provide a quiet option?
proposal trivial wontfix
#111: Add grouping field to CreateGermlines arguments
proposal minor resolved
#184: Add merge command to IMGT parsings docs
enhancement minor resolved
#183: DefineClones.py generates non determistic clone_id with nproc > 1
enhancement minor wontfix
#180: Have AssignGenes pass igblast warnings to the user somehow
enhancement minor new
#168: ParseDb-select gives obtuse error for missing fields
enhancement minor resolved
#147: Change-O modifications to support 10X data
enhancement major resolved
#167: Add sample annotation argument to ParseDb-merge
enhancement minor new
#166: Python version requirement
enhancement trivial resolved
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