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  3. Chicago

Issues

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Issues (26–50 of 53)

Title T P Status Votes Assignee Created Updated Actions
#46: About bam2chicago.sh error
bug major new
#45: Can't change --removeb2b value when I'm doing the design file
bug major new
#44: WashU output
bug major new
#41: bam2chicago problem
bug major new
#35: Cut2 odd behaviour
bug major new
#33: bam2chicago.sh worng number of fields
bug major new
#32: Chicago package cannot using its own truncated maxLBrownEst
bug major new
#30: makeDesignFiles.py
bug major resolved
#25: Reads filtered from chinput file?
bug major resolved
chicagoTeam
#29: Bam2chicago: no such file or directory
bug major resolved
#28: BAM2chicago awk error
bug major resolved
#26: all interactions filtered out - error
bug major new
chicagoTeam
#22: run Chicago Error
bug major new
#21: Error while running readAndMerge()
bug major resolved
chicagoTeam
#19: runChicago Error
bug major new
#10: Differing numbers of interactions reported in seqmonk and washU output files
bug major resolved
chicagoTeam
#7: ./bam2chicago.sh errors
bug major resolved
chicagoTeam
#8: Error in normaliseOtherEnds when combining multiple datsets
bug major resolved
chicagoTeam
#3: Different problems running replicates
bug major resolved
chicagoTeam
#4: .chinput does not show actual distance?
bug major resolved
chicagoTeam
#5: runChicago.R is not able to parse input parameters
bug major resolved
chicagoTeam
#79: ERROR :: Oligos file, rmap and baitmap production (DpnII enzyme HICUP)
bug critical closed
#54: What does the following messenge mean after I ran runChicago.R
bug critical new
#67: Error during Runchicago.R
bug critical new 1
#2: Error in get(binCol) : invalid first argument
bug critical resolved
chicagoTeam
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