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Issues (1–19 of 19)

Title T P Status Votes Assignee Milestone Created Updated Actions
#109: Trim not working for amino acid sequences
bug minor resolved
#103: groupGenes needs updated naming and to figure out the locus list.
bug minor resolved
#105: ylim argument in plotAbundanceCurve has no effect
bug minor resolved
#91: basic, acidic and aromatic output fields from aminoAcidProperties() are always zero
bug minor resolved
#90: NA row for geneCounts() on d_call
bug minor resolved
#89: getSegment doesn't work for C-regions
bug minor resolved
#87: writeChangeoDb() puts NA for null/blank values
bug minor invalid
#78: collapseDuplicates edge case (every sequence in a clone_id is ambiguous except for one sequence)
bug minor resolved
#80: alakazam::getnproc can sometimes return NA because of parallel::detectCores() which can be problematic for functions that use this command e.g. groupBaseline
bug minor resolved
#79: Issue is plotting output from estimateAbundance function using ExampleDb dataset
bug minor resolved
#74: Remove NSE from gather call in combineIgphyml
bug minor resolved
#70: error and warning messages from plotDiversityCurve()
bug minor resolved
#67: changing tmp directory buildPhylipLineage
bug minor resolved
#63: Clarification to using indirect=TRUE in testEdges
bug minor resolved
#56: `readChangeoDb` fails when input file contains non-standard column names
bug minor resolved
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong
bug minor resolved
#13: Cannot knit lineage vignette pdf
bug minor resolved
#9: Outstanding `R CMD check` warnings
bug minor resolved