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  2. B Cell Repertoires
  3. alakazam

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Issues (1–25 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#95: calcJunctionAlignment needs an example
task minor resolved
#82: Review NEWS and vignettes
task major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#47: Write test for distToNearest when seq has stop codon
task minor invalid
#11: Need to validate the significance tests in testDiversity
task major new
#29: Remove getPropertyDistance for v0.2.1
task trivial resolved
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#92: Add readAIRR() and update readChangeoDb(). They should accept a vector of files and check uniqueness
proposal minor new 1
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#33: getGene returns first not Not Localized results
proposal minor resolved
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#50: getSegment automatically strips D from names
proposal minor invalid
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#41: Alakazam with older R version
proposal major resolved
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#99: Calculate clonal frequencies
enhancement major resolved 1
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
#88: Clarify file I/O documentation
enhancement minor resolved
#77: (Commit hash 948e415) CLONE fields in Diversity.R need to be hard-coded and simplified
enhancement minor closed
#68: Added newick import/export
enhancement trivial resolved
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