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Issues (1–25 of 65)

Title T P Status Votes Assignee Milestone Created Updated Actions
#186: MakeDb.py igblast fails with KeyError: '# Query:'
bug minor resolved
#131: IMGT seqence/germline build in ConvertDb doesn't seem right
bug minor new 1
#147: Change-O modifications to support 10X data
enhancement major resolved
#159: CDS missing from ConvertDb-genbank output
bug major resolved
#156: parseAllele wrappers
enhancement trivial resolved
#155: Germline doesn't build for amino acid sequences in MakeDb-igblast-aa
enhancement minor resolved
#87: MakeDb does not support multiple D segment junctions
enhancement major new
#137: tbl2asn wrapper fails in some environments
bug minor closed
#148: Maybe merge extended field arguments in MakeDb
enhancement minor resolved
#135: Use yaml via -y to support additional Biosample attributes
enhancement minor resolved
#117: Verify indexing for functions
task critical resolved
#127: Add IMGT-gapping to AIRR conversion
enhancement minor resolved
#128: Add germline construction to MakeDb
enhancement minor resolved
#126: Add validation test for SEQUENCE_IMGT to MakeDb
bug major resolved
#114: Additional features to add to ConvertDb-genbank
enhancement major resolved
#122: Write a reverse ConvertDb-genbank
enhancement major new
#109: Cleanup Receptor and format parsing code
enhancement major resolved
#107: Verify V_SEQ_LENGTH is correct when indels are present
bug minor resolved
#120: Check all field arguments for case sensitivity
task trivial resolved
#106: Verify J_SEQ_START and D_SEQ_START bug is gone
bug major resolved
#121: Clarify the behavior of first and set actions in DefineClones usage docs
enhancement trivial resolved
#119: Convert output handle checks to try blocks
enhancement trivial resolved
#115: junction_aa contains extra AA before conserved C residue for TCR alpha
bug major resolved
#73: Add more detail to data standard docs
enhancement trivial resolved
#116: Added support to MakeDb-igblast for non-standard gene names
enhancement minor resolved
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