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Issues

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Issues (26–50 of 77)

Title T P Status Votes Assignee Milestone Created Updated Actions
#136: distToNearest doesn't support TCR data
bug major resolved
#134: function to find clonotypes based on clonotypes
proposal major new
#133: Saved TargetingModel objects out-of-date with the object structure
bug major resolved
#121: distToNearest plots should not show negative values
bug major resolved
#122: fix targeting models empty tests
bug major resolved
#130: Review NEWS and vignettes
task major resolved
#128: better error message for distToNearest
bug major closed
#83: groupBaseline - Profile memory usage
task major new
#126: regression in distToNearest()
bug major resolved
#125: Build error
bug major resolved
#123: Error when subsampling while calculating distToNearest between groups
bug major resolved
#114: Improve documentation for distToNearest subsampling
enhancement major resolved
#109: make plotBaselineDensity work without warning for single-sequence input
bug major resolved
#106: groupBaseline returns list_GroupPdfs, should be sorted_list_GroupPdfs?
bug major resolved
#25: Add support for region definitions to targeting model code
enhancement major wontfix
#8: Expand baseline plots
enhancement major invalid
#104: Write tests & run test on BASELINe for single-sequence input
task major resolved
#102: findThreshold seems to be stuck forever
bug major resolved
#103: calculateTargeting fails due to gaps in subSeq
bug major resolved
#100: observedMutations breaking with additional columns
bug major wontfix
#96: shmulateSeq() breaks when there's gap in input sequence
bug major resolved
#93: adapt calcObservedMutations for seq containing ambiguous character
task major resolved
#56: Add unique mutations per clone measures to targeting model generation
enhancement major wontfix
#27: Add options to clonal consensus generation to create non-randomized consensus sequences
enhancement major resolved
#86: distToNeareast failed on local machine too
bug major resolved
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