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Issues (1–25 of 165)

Title T P Status Votes Assignee Milestone Created Updated Actions
#166: Weird observedMutations results
bug major resolved
#165: Possible misuse of `all.equal` in the definition of `observedMutations`
bug minor resolved
#161: findThreshold() returns NA
enhancement major resolved
#164: Update deprecated aes_string() calls
task major resolved
#162: IMGT_V_BY_SEGMENTS is composed of five parts CDR1, CDR2, FWR1, FWR2 and FWR3?
proposal major resolved
#160: Weighted collapseClones mostcommon
enhancement minor new
#159: distToNearest amino acid model – "IUPAC base expected" error
bug major resolved
#158: shazam::plotMutability() misaligns mutability bars and nucleotide motifs on "bar" style
bug major resolved
#157: MMR in SHmulate
proposal minor resolved
#156: collapseClones unused argument "fields"
bug minor resolved
#155: install.packages("shazam") does not work
bug major resolved
#154: Error in {: task 658 failed - "missing value where TRUE/FALSE needed"
bug major resolved
#153: Add an option to `observedMutations` to always report stop mutations
proposal minor new
#149: exentedRegion branch lineage functions and `parent_sequence`
enhancement major resolved
#152: odd mutation results
bug major resolved
#148: ObservedMutations for cdr3 regions
enhancement major resolved
#147: Validate sequences before counting mutations
enhancement minor new
#118: Improve docs
enhancement minor open
#135: CDR3 region definition
enhancement major closed
#137: createTargetingModel docs are crazy
bug trivial resolved
#138: calcObservedMutations isn't handling germline gaps correctly
bug major resolved
#136: distToNearest doesn't support TCR data
bug major resolved
#134: function to find clonotypes based on clonotypes
proposal major new
#133: Saved TargetingModel objects out-of-date with the object structure
bug major resolved
#132: distToNearest won't work if V_CALL or J_CALL are factors
bug minor resolved
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