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Issues (1–25 of 39)

Title T P Status Votes Assignee Milestone Created Updated Actions
#39: Error in findNovelAlleles(db, germline_db = ighv, nproc = 2)
bug major resolved
#38: inferGenotypeBayesian example in the Vignette generates incorrect output
bug major new
#36: Tigger alleles not found
bug major resolved
#23: `GermlineIGHV` contains an allele that is not found in IMGT reference
bug minor resolved
#30: install_dep.R finds two versions of alakazam, warns version could not be detected then test server set up fails
bug major resolved
#29: Use alakazam::cpuCount for nproc detection
bug minor resolved
#28: Change airr variable names for alakazam style version
bug major resolved
#22: Novel alleles should maintain dots for IMGT-gaps
bug major resolved
#20: itigger summary data.frame doesn't report all novel alleles
bug major resolved
#18: selectNovel removes all identical novel alleles
bug major resolved
#17: Fix plot function in expected build failure 603c736
bug major resolved
#7: Duplicate assignment 'reassignAlleles' function
bug minor resolved
#14: weird warning message when running `reassignAlleles()`
bug minor resolved
#9: Temporary workaround for weird dplyr bug
bug major resolved
#11: inferNovelAlleles multiprocessing fails
bug major resolved
#5: Newline character horror
bug minor resolved
#8: Few lingering check issue
bug major resolved
#6: R CMD check issues
bug major resolved
#3: sortAlleles
bug minor resolved
#2: Outstanding `R CMD check` errors, warnings and relevant notes.
bug minor resolved
#37: Document how to incorporate sequencing quality into the workflow of finding novel alleles
enhancement minor new
#31: Inconsistency in novel allele between genotype plot and evidence plot
enhancement major open
#21: Update example data with new columns
enhancement trivial resolved
#16: Add to inferGenotype output table info from findNovelAlleles output
enhancement major resolved
#13: Add additional evidence columns to findNovelAlleles output
enhancement major resolved
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