1. Petr Novak Avatar Petr Novak
  2. RepeatExplorer
  3. repex_tarean

Issues

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Issues (1–25 of 78)

Title T P Status Votes Assignee Created Updated Actions
#78: run RepeatExplorer2 clustering on genome file encountered error
bug major new
#77: error during copy custom_databse
bug major new
#76: dependency problem in galaxy server
bug major resolved
#75: Failure to run large RepeatExplorer run 1TB RAM
bug minor new
#74: Problem with conda env
bug major new
#73: Cannot connect through filezilla
bug major new
#72: Is there a way to have TAREAN run k-mer analysis / logo generation on "other" hits
task major new
#71: Error in visualization of comparative analysis using R
bug major new
#70: Error - writing directory
bug major new
#69: mgblast: no such file or directory
bug major new
#68: To classify LTRs
enhancement major new
#67: fatal error: 'malloc.h' file not found
bug major new
#66: No 'Cluster_similarity_hits' column in CLUSTER_TABLE.csv on Galaxy
bug minor new
#65: Error with mgblast
bug major resolved
#64: test_repex_pipeline.py fails without saying why
bug major new
#63: Error: long vectors not supported yet: qap_encode.c:36
bug major resolved
#62: blastx clusters
bug major new
#61: unable to start device PNG
bug major new
#60: tarean only mode require the protein database and should not
bug minor new
#59: KeyError: 'E00576:120:HGJFMCCXY:4:1103:23937:69607'
bug major new
#58: checkR.R does not detect Biostrings
bug trivial resolved
#57: add vallidation of custom database
enhancement major new
#56: TypeError: 'str' does not support the buffer interface
bug major new
#55: round number in output html table report
enhancement minor resolved
#54: high proportion of reads is not correctly oriented in some clusters
bug major resolved
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