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Issues (1–25 of 106)

Title T P Status Votes Assignee Created Updated Actions
#84: vcontact2: Error in protein module computation
bug major new 1
#104: AttributeError: module 'numpy' has no attribute 'warnings'
bug major new 3
#103: test datasets are classified as Unassigned
bug major new
#91: Run vcontact2 successfully！
bug major new
#89: Could not find ClusterONE java file
bug major new
#105: how to generate taxonomy abundance table
proposal trivial new
#98: Different clustering between my own genomes when using different database
bug critical new
#97: solve ERROR:vcontact2: Error in contig clustering ERROR:vcontact2: No columns to parse from file
bug major new 1
#35: Linking contigID to VC
enhancement critical new 3
#80: Protein clustering : OverflowError
bug major new 3
#599: ValueError: Inexact indices into sparse matrices are not allowed
task major new 2
#53: Error: Incomplete database file
bug major new
#78: AttributeError: module 'pypandoc' has no attribute 'convert'
bug major new 1
#36: ERROR:vcontact2: Error in contig clustering ERROR:vcontact2: No columns to parse from file
bug major resolved
#16: ERROR:vcontact2: 'DataFrame' object has no attribute 'ix'
bug major resolved
#102: KeyError: 'Acinetobacter~virus~Acj61'
bug major new
#99: ERROR:vcontact2: Error in contig clustering & No columns to parse from file
bug major new
#101: TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType
bug major resolved
#100: use of non-viral sequences
proposal major new
#38: Error in Calculating Similarity Networks : "vcontact2: Error in viral clusters"
bug major new
#96: ERROR:vcontact2: Error in contig clustering ERROR:vcontact2: No columns to parse from file
bug major new
#71: Stopping at "Calculating Similarity Networks"
bug major new
#95: cat ~/vcontact-output/genome_by_genome_overview.csv: No such file or directory
bug major new
#94: Access Predictive Proteins Per VC
proposal major new
#93: TypeError: 'numpy.float64' object cannot be interpreted as an integer
bug major resolved
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