1. chicagoTeam Avatar chicagoTeam
  2. Untitled project
  3. Chicago

Issues

Filter by:

Advanced search

Issues (26–50 of 65)

Title T P Status Votes Assignee Created Updated Actions
#33: bam2chicago.sh worng number of fields
bug major new
#35: Cut2 odd behaviour
bug major new
#36: Can I change the threshold?
task major resolved
#37: makeDesignFiles.py compatible with python3
proposal major new
#39: after hicup, rmap baitmap and runchicago.r
enhancement major new
#40: problems with calibration
task major new
#41: bam2chicago problem
bug major new
#42: create_baitmap_rmap.pl: error:Could not find '1 310' in digest_fragments hash - the digest file and oligo probes file appear to be incompatible.
enhancement major new
#43: 'bam2chicago.sh' problem
bug major new
#44: WashU output
bug major new
#45: Can't change --removeb2b value when I'm doing the design file
bug major new
#46: About bam2chicago.sh error
bug major new
#47: runChicago.R errors during "Reading NBaitsPerBin file" step
bug major new 1
#48: Chicago works with each two of three replicates, but not with all three together
bug major resolved
#49: Assign designDir path to a Chicago object
task major new
#50: makeDesignFiles.py: ValueError: invalid literal for int() with base 10: 'start'
bug major resolved
#51: --en-feat-list
bug major resolved
#52: 4 Cutter Capture HiC
enhancement major resolved
#53: Small capture library
enhancement major new
#55: readAndMerge() different outputs everytime I run it
bug major new
#56: bam2chicago.sh error: empty baitOnRight.bedpe file
bug major new
#58: runChicago.R error with design directory
bug major new
#59: runChicago.R error | designing-directory not parsing
bug major new
#60: Error in if (cj == upper) next : missing value where TRUE/FALSE needed Calls: chicagoPipeline -> normaliseOtherEnds -> .addTLB -> cut2
bug major new
#61: install Chicago Error: Failed to install 'unknown package' from Bitbucket:
bug major new
  2. 1
  3. 2
  4. 3