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  2. B Cell Repertoires
  3. alakazam

Issues

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Issues (1–25 of 40)

Title T P Status Votes Assignee Milestone Created Updated Actions
#82: Review NEWS and vignettes
task major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#11: Need to validate the significance tests in testDiversity
task major new
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#41: Alakazam with older R version
proposal major resolved
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#99: Calculate clonal frequencies
enhancement major resolved 1
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#75: New diversity functions
enhancement major resolved
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#76: Document use of collapseDuplicates outside of makeChangeClone
enhancement major new
#48: Add saturation curves
enhancement major new
#19: Incorporate prototype-topology package
enhancement major resolved
#30: For aminoAcidProperties and related fx: test NAs
enhancement major resolved
#26: translateDNA should take a vector
enhancement major resolved
#27: countPattern should take a vector
enhancement major resolved
#14: Updated package to use dplyr
enhancement major resolved
#25: Add coverage curves
enhancement major new
#12: Add amino acid properties functions
enhancement major resolved
#106: change groupGenes only_heavy default from T to F
bug major new
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#101: Error running estimateAbundance
bug major resolved
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